Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 15 curated entries in PaperBLAST's database that match '1.2.1.54'.

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0967: aldehyde dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

kauB / Q9HTP2: 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54; EC 1.2.1.19) from Pseudomonas aeruginosa

 73% id,
100% cov

PS417_27745: gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas simiae

 73% id,
100% cov

PP5278 / Q88CA3: 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas putida

 73% id,
100% cov

More...

Shew_3574: aldehyde dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

PP5278 / Q88CA3: 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas putida

 42% id,
94% cov

kauB / Q9HTP2: 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54; EC 1.2.1.19) from Pseudomonas aeruginosa

 41% id,
94% cov

PfGW456L13_805: gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas fluorescens

 40% id,
94% cov

More...

Shew_3173: succinic semialdehyde dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

BADH1_ARATH / Q9S795: Aminoaldehyde dehydrogenase ALDH10A8, chloroplastic; 4-trimethylammoniobutyraldehyde dehydrogenase ALDH10A8; Aldehyde dehydrogenase family 10 member A8; Aminobutyraldehyde dehydrogenase ALDH10A8; Betaine aldehyde dehydrogenase ALDH10A8; Gamma-guanidinobutyraldehyde dehydrogenase ALDH10A8; EC 1.2.1.-; EC 1.2.1.47; EC 1.2.1.19; EC 1.2.1.8; EC 1.2.1.54 from Arabidopsis thaliana

 39% id,
95% cov

PS417_27745: gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas simiae

 37% id,
97% cov

PP5278 / Q88CA3: 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas putida

 37% id,
96% cov

More...

Shew_0965: methylmalonate-semialdehyde dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

PS417_27745: gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas simiae

 32% id,
95% cov

kauB / Q9HTP2: 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54; EC 1.2.1.19) from Pseudomonas aeruginosa

 32% id,
95% cov

PP5278 / Q88CA3: 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas putida

 32% id,
95% cov

More...

Shew_0580: succinylglutamic semialdehyde dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

kauB / Q9HTP2: 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54; EC 1.2.1.19) from Pseudomonas aeruginosa

 32% id,
93% cov

BADH2_ARATH / Q9STS1: Aminoaldehyde dehydrogenase ALDH10A9, peroxisomal; 4-trimethylammoniobutyraldehyde dehydrogenase ALDH10A9; Aldehyde dehydrogenase family 10 member A9; Aminobutyraldehyde dehydrogenase ALDH10A9; Betaine aldehyde dehydrogenase ALDH10A9; Gamma-guanidinobutyraldehyde dehydrogenase ALDH10A8; EC 1.2.1.-; EC 1.2.1.47; EC 1.2.1.19; EC 1.2.1.8; EC 1.2.1.54 from Arabidopsis thaliana

 33% id,
91% cov

BADH1_ARATH / Q9S795: Aminoaldehyde dehydrogenase ALDH10A8, chloroplastic; 4-trimethylammoniobutyraldehyde dehydrogenase ALDH10A8; Aldehyde dehydrogenase family 10 member A8; Aminobutyraldehyde dehydrogenase ALDH10A8; Betaine aldehyde dehydrogenase ALDH10A8; Gamma-guanidinobutyraldehyde dehydrogenase ALDH10A8; EC 1.2.1.-; EC 1.2.1.47; EC 1.2.1.19; EC 1.2.1.8; EC 1.2.1.54 from Arabidopsis thaliana

 32% id,
93% cov

More...

Shew_0615: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

PP5278 / Q88CA3: 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas putida

 32% id,
95% cov

kauB / Q9HTP2: 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54; EC 1.2.1.19) from Pseudomonas aeruginosa

 32% id,
94% cov

AO356_12580: gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas fluorescens

 30% id,
94% cov

More...

Shew_1668: methylmalonate-semialdehyde dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

AADH1_PEA / Q8VWZ1: Aminoaldehyde dehydrogenase 1, peroxisomal; PsAMADH1; Aminobutyraldehyde dehydrogenase AMADH1; Gamma-guanidinobutyraldehyde dehydrogenase AMADH1; EC 1.2.1.-; EC 1.2.1.19; EC 1.2.1.54 from Pisum sativum

 31% id,
95% cov

BADH1_ARATH / Q9S795: Aminoaldehyde dehydrogenase ALDH10A8, chloroplastic; 4-trimethylammoniobutyraldehyde dehydrogenase ALDH10A8; Aldehyde dehydrogenase family 10 member A8; Aminobutyraldehyde dehydrogenase ALDH10A8; Betaine aldehyde dehydrogenase ALDH10A8; Gamma-guanidinobutyraldehyde dehydrogenase ALDH10A8; EC 1.2.1.-; EC 1.2.1.47; EC 1.2.1.19; EC 1.2.1.8; EC 1.2.1.54 from Arabidopsis thaliana

 30% id,
95% cov

PfGW456L13_805: gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas fluorescens

 30% id,
96% cov

More...

Shew_3103: aldehyde dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

Pf6N2E2_4383: gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas fluorescens

 29% id,
89% cov

AO356_12580: gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas fluorescens

 29% id,
89% cov

AADH2_SOLLC / B6ECN9: Aminoaldehyde dehydrogenase 2; SlAMADH2; 4-trimethylammoniobutyraldehyde dehydrogenase AMADH2; Aminobutyraldehyde dehydrogenase AMADH2; Gamma-guanidinobutyraldehyde dehydrogenase AMADH2; EC 1.2.1.-; EC 1.2.1.47; EC 1.2.1.19; EC 1.2.1.54 from Solanum lycopersicum

 29% id,
88% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory