Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 33 curated entries in PaperBLAST's database that match '1.3.1.12'.

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1068: bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli
tyrA / P07023: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli

58% id,
99% cov

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

55% id,
98% cov

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

31% id,
91% cov

Shew_1959: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

SPS19_YEAST / P32573: Peroxisomal 2,4-dienoyl-CoA reductase SPS19 [(3E)-enoyl-CoA-producing]; Sporulation-specific protein SPX19; EC 1.3.1.124 from Saccharomyces cerevisiae
SPS19 / P32573: 2,4-dienoyl-CoA reductase (EC 1.3.1.124) from Saccharomyces cerevisiae

43% id,
86% cov

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens

43% id,
84% cov

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

42% id,
84% cov

More...

Shew_2862: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

34% id,
87% cov

DECR2_ARATH / Q9LTV6: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; EC 1.3.1.124 from Arabidopsis thaliana

28% id,
86% cov

DECR_HUMAN / Q16698: 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial; 2,4-dienoyl-CoA reductase [NADPH]; 4-enoyl-CoA reductase [NADPH]; Short chain dehydrogenase/reductase family 18C member 1; EC 1.3.1.124 from Homo sapiens

30% id,
74% cov

Shew_3525: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

32% id,
85% cov

SPS19_YEAST / P32573: Peroxisomal 2,4-dienoyl-CoA reductase SPS19 [(3E)-enoyl-CoA-producing]; Sporulation-specific protein SPX19; EC 1.3.1.124 from Saccharomyces cerevisiae
SPS19 / P32573: 2,4-dienoyl-CoA reductase (EC 1.3.1.124) from Saccharomyces cerevisiae

26% id,
84% cov

Shew_1407: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

DECR2_ARATH / Q9LTV6: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; EC 1.3.1.124 from Arabidopsis thaliana

30% id,
86% cov

DECR2_MOUSE / Q9WV68: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; EC 1.3.1.124 from Mus musculus

29% id,
84% cov

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

28% id,
84% cov

More...

Shew_1603: 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

28% id,
88% cov

Shew_2557: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens

29% id,
84% cov

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

26% id,
84% cov

SPS19_YEAST / P32573: Peroxisomal 2,4-dienoyl-CoA reductase SPS19 [(3E)-enoyl-CoA-producing]; Sporulation-specific protein SPX19; EC 1.3.1.124 from Saccharomyces cerevisiae
SPS19 / P32573: 2,4-dienoyl-CoA reductase (EC 1.3.1.124) from Saccharomyces cerevisiae

26% id,
64% cov

Shew_2409: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

DECR2_ARATH / Q9LTV6: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; EC 1.3.1.124 from Arabidopsis thaliana

28% id,
83% cov

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens

25% id,
82% cov

DECR2_MOUSE / Q9WV68: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; EC 1.3.1.124 from Mus musculus

25% id,
82% cov

More...

Shew_1332: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

DECR2_MOUSE / Q9WV68: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; EC 1.3.1.124 from Mus musculus

26% id,
84% cov

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

24% id,
84% cov

Shew_1322: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

26% id,
86% cov

DECR_HUMAN / Q16698: 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial; 2,4-dienoyl-CoA reductase [NADPH]; 4-enoyl-CoA reductase [NADPH]; Short chain dehydrogenase/reductase family 18C member 1; EC 1.3.1.124 from Homo sapiens

26% id,
73% cov

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens

32% id,
48% cov

More...

Shew_1481: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

26% id,
71% cov

Shew_1072: chorismate mutase (RefSeq)
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

30% id,
56% cov

Shew_2617: potassium efflux system protein (RefSeq)
is similar to:
PaperBLAST

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

28% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2263995-2264831 (frame +3) on 113993
is similar to:
PaperBLAST

SPS19_YEAST / P32573: Peroxisomal 2,4-dienoyl-CoA reductase SPS19 [(3E)-enoyl-CoA-producing]; Sporulation-specific protein SPX19; EC 1.3.1.124 from Saccharomyces cerevisiae
SPS19 / P32573: 2,4-dienoyl-CoA reductase (EC 1.3.1.124) from Saccharomyces cerevisiae
Also see hits to annotated proteins above

43% id,
90% cov

1234295-1236301 (frame -3) on 113993
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus
Also see hits to annotated proteins above

29% id,
58% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory