Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 11 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1068: bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli
tyrA / P07023: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli

58% id,
99% cov

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

55% id,
98% cov

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

31% id,
91% cov

Shew_1072: chorismate mutase (RefSeq)
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

30% id,
56% cov

Shew_2617: potassium efflux system protein (RefSeq)
is similar to:
PaperBLAST

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

28% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1234295-1236301 (frame -3) on 113993
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus
Also see hits to annotated proteins above

29% id,
58% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory