Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 43 curated entries in PaperBLAST's database that match '1.3.3.6' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0900: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

35% id,
88% cov

ACOX2_CUCMA / O64894: Acyl-coenzyme A oxidase, peroxisomal; AOX; Long-chain acyl-CoA oxidase; EC 1.3.3.6 from Cucurbita maxima

23% id,
59% cov

ACOX2_ARATH / O65201: Acyl-coenzyme A oxidase 2, peroxisomal; AOX 2; Long-chain acyl-CoA oxidase; AtCX2; EC 1.3.3.6 from Arabidopsis thaliana
ACX2 / O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

25% id,
28% cov

More...

Shew_2570: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

29% id,
87% cov

Shew_1669: butyryl-CoA dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

24% id,
85% cov

Shew_1961: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

26% id,
78% cov

Shew_2108: acyl-CoA dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

24% id,
77% cov

Shew_3003: acyl-CoA dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

26% id,
53% cov

Shew_2051: acyl-CoA dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

28% id,
49% cov

Shew_1878: 2-nitropropane dioxygenase, NPD (RefSeq)
is similar to:
PaperBLAST

fabX / O25465: decanoate oxidase (EC 1.3.3.6; EC 5.3.3.14) from Helicobacter pylori

28% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory