Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 23 curated entries in PaperBLAST's database that match '1.3.8.4' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2570: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

94% id,
100% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

91% id,
100% cov

liuA / Q9I296: isovaleryl-CoA dehydrogenase subunit (EC 1.3.8.4) from Pseudomonas aeruginosa

79% id,
99% cov

More...

Shew_1669: butyryl-CoA dehydrogenase (RefSeq)
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

37% id,
99% cov

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

34% id,
98% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

33% id,
98% cov

More...

Shew_0900: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp.

35% id,
95% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

34% id,
95% cov

PS417_17015: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas simiae

34% id,
96% cov

More...

Shew_1961: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

29% id,
99% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

28% id,
96% cov

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

28% id,
96% cov

More...

Shew_2675: crotonobetainyl-CoA dehydrogenase (RefSeq)
is similar to:
PaperBLAST

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

29% id,
98% cov

liuA / Q9I296: isovaleryl-CoA dehydrogenase subunit (EC 1.3.8.4) from Pseudomonas aeruginosa

29% id,
99% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

28% id,
98% cov

More...

Shew_2051: acyl-CoA dehydrogenase (RefSeq)
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

29% id,
90% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

26% id,
86% cov

Pf6N2E2_2191: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

25% id,
86% cov

More...

Shew_2164: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

26% id,
97% cov

IVD_RAT / P12007: Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; Butyryl-CoA dehydrogenase; EC 1.3.8.4; EC 1.3.8.1 from Rattus norvegicus
P12007: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Rattus norvegicus

27% id,
91% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

25% id,
96% cov

More...

Shew_2108: acyl-CoA dehydrogenase (RefSeq)
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

25% id,
99% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

22% id,
91% cov

IVD_HUMAN / P26440: Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; Butyryl-CoA dehydrogenase; EC 1.3.8.4; EC 1.3.8.1 from Homo sapiens

22% id,
87% cov

More...

Shew_2868: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

IVD_SOLTU / Q9FS87: Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; Isovaleryl-CoA dehydrogenase 2; St-IVD2; EC 1.3.8.4 from Solanum tuberosum
Q9FS87: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Solanum tuberosum

26% id,
94% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

27% id,
87% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

26% id,
90% cov

More...

Shew_2860: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

24% id,
98% cov

Shew_3003: acyl-CoA dehydrogenase (RefSeq)
is similar to:
PaperBLAST

IVD_SOLTU / Q9FS87: Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; Isovaleryl-CoA dehydrogenase 2; St-IVD2; EC 1.3.8.4 from Solanum tuberosum
Q9FS87: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Solanum tuberosum

25% id,
76% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

25% id,
74% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

25% id,
76% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory