Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 5 curated entries in PaperBLAST's database that match '1.4.3.25' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2360: D-amino-acid dehydrogenase (RefSeq)
is similar to:
PaperBLAST

P72346: L-amino-acid oxidase (EC 1.4.3.2); L-arginine oxidase (EC 1.4.3.25) from Synechococcus elongatus

23% id,
53% cov

Shew_1942: NADH:flavin oxidoreductase/NADH oxidase (RefSeq)
is similar to:
PaperBLAST

P72346: L-amino-acid oxidase (EC 1.4.3.2); L-arginine oxidase (EC 1.4.3.25) from Synechococcus elongatus

38% id,
8% cov

Shew_2679: FAD dependent oxidoreductase (RefSeq)
is similar to:
PaperBLAST

OXLA_HUMAN / Q96RQ9: L-amino-acid oxidase; LAAO; LAO; Interleukin-4-induced protein 1; IL4-induced protein 1; hIL4I1; Protein Fig-1; hFIG1; EC 1.4.3.2; EC 1.4.3.25 from Homo sapiens

41% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory