Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 6 curated entries in PaperBLAST's database that match '1.5.1.1' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2955: ornithine cyclodeaminase (RefSeq)
is similar to:
PaperBLAST

Q485R8: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] (EC 1.5.1.1) from Colwellia psychrerythraea

54% id,
100% cov

CRYM / Q14894: ketimine reductase monomer (EC 1.5.1.1; EC 1.5.1.25) from Homo sapiens

30% id,
92% cov

PY2CR_AZOBR / V5YW53: Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase; Pyr2C/Pip2C reductase; EC 1.5.1.1 from Azospirillum brasilense
V5YW53: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] (EC 1.5.1.1) from Azospirillum brasilense

28% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory