Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 5 curated entries in PaperBLAST's database that match '1.5.1.50'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0048: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

FOLM_ECOLI / P0AFS3: Dihydromonapterin reductase; H(2)-MPt reductase; Dihydrofolate reductase; DHFR; EC 1.5.1.50; EC 1.5.1.3 from Escherichia coli
YdgB / b1606: dihydromonapterin reductase (EC 1.5.1.50; EC 1.5.1.3) from Escherichia coli
folM / P0AFS3: dihydromonapterin reductase (EC 1.5.1.50; EC 1.5.1.3) from Escherichia coli
P0AFS3: dihydromonapterin reductase (EC 1.5.1.50) from Escherichia coli

53% id,
100% cov

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

27% id,
91% cov

Shew_2034: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

31% id,
90% cov

Shew_3525: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

28% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory