Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 62 curated entries in PaperBLAST's database that match '1.8.1.4' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 19 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3429: dihydrolipoamide dehydrogenase (RefSeq)
is similar to:
PaperBLAST

DLDH_ECOLI / P0A9P0: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; Glycine cleavage system L protein; EC 1.8.1.4 from Escherichia coli
Lpd / b0116: lipoamide dehydrogenase (EC 1.8.1.4) from Escherichia coli
lpd / SP|P0A9P1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Escherichia coli
lpd / P0A9P0: lipoamide dehydrogenase (EC 1.8.1.4) from Escherichia coli
P0A9P0: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

86% id,
100% cov

DLDH_HYMDI / P80647: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta

59% id,
92% cov

pdhL: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Cupriavidus necator
Q0KBV8: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Cupriavidus necator

66% id,
80% cov

More...

Shew_3660: glutathione reductase (RefSeq)
is similar to:
PaperBLAST

DLDH_HYMDI / P80647: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta

45% id,
89% cov

DLDH_THESS / P85207: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Thermus scotoductus

33% id,
95% cov

pdhD / GB|CAB13334.1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Bacillus subtilis
pdhD / P21880: dihydrolipoyl dehydrogenase component subunit (EC 1.8.1.4) from Bacillus subtilis

32% id,
95% cov

More...

Shew_0729: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq)
is similar to:
PaperBLAST

DLDH_THESS / P85207: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Thermus scotoductus

25% id,
92% cov

pdhD / P75393: pyruvate dehydrogenase complex E3 component (EC 1.8.1.4) from Mycoplasma pneumoniae

24% id,
88% cov

DLDH1_GEOSE / P11959: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate complex; EC 1.8.1.4 from Geobacillus stearothermophilus
pdhD / GB|CAA37631.1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Geobacillus stearothermophilus
P11959: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Geobacillus stearothermophilus

26% id,
76% cov

More...

Shew_0793: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq)
is similar to:
PaperBLAST

DLDH_CORGL / Q8NTE1: Dihydrolipoyl dehydrogenase; LPD; Dihydrolipoamide dehydrogenase; E3 component of alpha-ketoacid dehydrogenase complexes; EC 1.8.1.4 from Corynebacterium glutamicum

26% id,
74% cov

LPD1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Candida albicans

23% id,
69% cov

A0A0K9R8G5: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Spinacia oleracea

23% id,
62% cov

More...

Shew_2026: alanine dehydrogenase (RefSeq)
is similar to:
PaperBLAST

pdhD / GB|CAB13334.1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Bacillus subtilis
pdhD / P21880: dihydrolipoyl dehydrogenase component subunit (EC 1.8.1.4) from Bacillus subtilis

21% id,
56% cov

Shew_3430: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq)
is similar to:
PaperBLAST

lpdA / B3TZD6: dihydrolipoamide dehydrogenase (EC 1.8.1.4) from Advenella kashmirensis

47% id,
25% cov

pdhL: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Cupriavidus necator
Q0KBV8: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Cupriavidus necator

55% id,
20% cov

lpdA / B3TZD6: dihydrolipoamide dehydrogenase (EC 1.8.1.4) from Advenella kashmirensis

45% id,
24% cov

More...

Shew_3112: flavocytochrome c (RefSeq)
is similar to:
PaperBLAST

Q8VPK7: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Streptococcus pneumoniae

25% id,
44% cov

Q8MUB0: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Bombyx mori

41% id,
10% cov

Shew_2027: NAD(P) transhydrogenase subunit alpha (RefSeq)
is similar to:
PaperBLAST

pdhD / GB|CAB13334.1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Bacillus subtilis
pdhD / P21880: dihydrolipoyl dehydrogenase component subunit (EC 1.8.1.4) from Bacillus subtilis

23% id,
47% cov

Shew_1942: NADH:flavin oxidoreductase/NADH oxidase (RefSeq)
is similar to:
PaperBLAST

A4V929: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Acidianus ambivalens

27% id,
38% cov

Shew_3181: fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein (RefSeq)
is similar to:
PaperBLAST

DLDH_AZOVI / P18925: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate complex; EC 1.8.1.4 from Azotobacter vinelandii
GI|142325: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Azotobacter vinelandii

26% id,
38% cov

DLDH_PSEFL / P14218: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of 2-oxoglutarate dehydrogenase complex; EC 1.8.1.4 from Pseudomonas fluorescens

30% id,
14% cov

Q9I3D1: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Pseudomonas aeruginosa
A0A0H2Z9F5: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Pseudomonas aeruginosa

30% id,
14% cov

More...

Shew_3521: tryptophan halogenase (RefSeq)
is similar to:
PaperBLAST

DLDH_MYCTU / P9WHH9: Dihydrolipoyl dehydrogenase; LPD; Component of peroxynitrite reductase/peroxidase complex; Component of PNR/P; Dihydrolipoamide dehydrogenase; E3 component of alpha-ketoacid dehydrogenase complexes; EC 1.8.1.4 from Mycobacterium tuberculosis
P9WHH8: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Mycobacterium tuberculosis
P9WHH9: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Mycobacterium tuberculosis

24% id,
41% cov

A5N930: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Clostridium kluyveri

25% id,
38% cov

Q8MUB0: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Bombyx mori

27% id,
28% cov

More...

Shew_2679: FAD dependent oxidoreductase (RefSeq)
is similar to:
PaperBLAST

Q8VPK7: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Streptococcus pneumoniae

28% id,
31% cov

Shew_0809: formate dehydrogenase, alpha subunit (RefSeq)
is similar to:
PaperBLAST

Q04829: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Haloferax volcanii

24% id,
31% cov

lpdA / B3TZD6: dihydrolipoamide dehydrogenase (EC 1.8.1.4) from Advenella kashmirensis

36% id,
15% cov

Shew_1656: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase (RefSeq)
is similar to:
PaperBLAST

Q8VPK7: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Streptococcus pneumoniae

29% id,
24% cov

Shew_2439: RND family efflux transporter MFP subunit (RefSeq)
is similar to:
PaperBLAST

lpdA / B3TZD6: dihydrolipoamide dehydrogenase (EC 1.8.1.4) from Advenella kashmirensis

21% id,
32% cov

Shew_2028: thioredoxin reductase (RefSeq)
is similar to:
PaperBLAST

lpdA / O84561: dihydrolipoyl dehydrogenase subunit (EC 1.8.1.4) from Chlamydia trachomatis

31% id,
18% cov

A0A0H2ZB32: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Pseudomonas aeruginosa

45% id,
9% cov

P50970: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Zymomonas mobilis

48% id,
9% cov

More...

Shew_1537: FAD dependent oxidoreductase (RefSeq)
is similar to:
PaperBLAST

Q8VPK7: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Streptococcus pneumoniae

34% id,
13% cov

PLPD2_ARATH / F4JLP5: Dihydrolipoyl dehydrogenase 2, chloroplastic; ptLPD2; Dihydrolipoamide dehydrogenase 2; Protein LIPOAMIDE DEHYDROGENASE 2; Pyruvate dehydrogenase complex E3 subunit 2; E3-2; PDC-E3 2; EC 1.8.1.4 from Arabidopsis thaliana

30% id,
14% cov

PLPD1_ARATH / A8MS68: Dihydrolipoyl dehydrogenase 1, chloroplastic; ptLPD1; Dihydrolipoamide dehydrogenase 1; Protein LIPOAMIDE DEHYDROGENASE 1; Pyruvate dehydrogenase complex E3 subunit 1; E3-1; PDC-E3 1; EC 1.8.1.4 from Arabidopsis thaliana

30% id,
13% cov

More...

Shew_0977: FAD dependent oxidoreductase (RefSeq)
is similar to:
PaperBLAST

pdhD / GB|CAB13334.1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Bacillus subtilis
pdhD / P21880: dihydrolipoyl dehydrogenase component subunit (EC 1.8.1.4) from Bacillus subtilis

51% id,
8% cov

Shew_0591: glucose-methanol-choline oxidoreductase (RefSeq)
is similar to:
PaperBLAST

DLDH_PIG / P09623: Dihydrolipoyl dehydrogenase, mitochondrial; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Sus scrofa
P09623: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Sus scrofa

39% id,
10% cov

DLDH_HUMAN / P09622: Dihydrolipoyl dehydrogenase, mitochondrial; Dihydrolipoamide dehydrogenase; Glycine cleavage system L protein; EC 1.8.1.4 from Homo sapiens
DLD / P09622: dihydrolipoyl dehydrogenase monomer (EC 1.8.1.4) from Homo sapiens
P09622: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Homo sapiens

37% id,
10% cov

Q8MUB0: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Bombyx mori

38% id,
9% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 14 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1765277-1766611 (frame +2) on 113993
is similar to:
PaperBLAST

PLPD1_ARATH / A8MS68: Dihydrolipoyl dehydrogenase 1, chloroplastic; ptLPD1; Dihydrolipoamide dehydrogenase 1; Protein LIPOAMIDE DEHYDROGENASE 1; Pyruvate dehydrogenase complex E3 subunit 1; E3-1; PDC-E3 1; EC 1.8.1.4 from Arabidopsis thaliana
Also see hits to annotated proteins above

26% id,
19% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory