Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 26 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2986: 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (RefSeq)
is similar to:

MetE / b3829: cobalamin-independent homocysteine transmethylase (EC from Escherichia coli
metE: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; EC from Escherichia coli
metE / P25665: cobalamin-independent homocysteine transmethylase (EC from Escherichia coli
P25665: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase (EC from Escherichia coli

57% id,
99% cov

METE2_ARATH / Q9SRV5: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2; Cobalamin-independent methionine synthase 2; AtMS2; EC from Arabidopsis thaliana
AtMS2 / Q9SRV5: cobalamin-independent methionine synthase MS2 (EC from Arabidopsis thaliana

47% id,
99% cov

METE1_ARATH / O50008: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1; Cobalamin-independent methionine synthase 1; AtMS1; Vitamin-B12-independent methionine synthase 1; EC from Arabidopsis thaliana
O50008: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase (EC from Arabidopsis thaliana

47% id,
99% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory