Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 85 curated entries in PaperBLAST's database that match '2.3.1.16' as complete word(s).

These curated entries have 64 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0018: 3-ketoacyl-CoA thiolase (RefSeq)
is similar to:
PaperBLAST

Shewana3_0023: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Shewanella sp.

92% id,
100% cov

Sama_0031: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Shewanella amazonensis

90% id,
100% cov

fadA / A0A140NDQ6: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Escherichia coli

72% id,
100% cov

More...

Shew_1667: acetyl-CoA acetyltransferase (RefSeq)
is similar to:
PaperBLAST

SO1677: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) from Shewanella oneidensis

86% id,
100% cov

AO353_25685: acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) from Pseudomonas fluorescens

62% id,
99% cov

PfGW456L13_2982: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Pseudomonas fluorescens

61% id,
99% cov

More...

Shew_2426: 3-ketoacyl-CoA thiolase (RefSeq)
is similar to:
PaperBLAST

FADI_ECOLI / P76503: 3-ketoacyl-CoA thiolase FadI; ACSs; Acetyl-CoA acyltransferase; Acyl-CoA ligase; Beta-ketothiolase; Fatty acid oxidation complex subunit beta; EC 2.3.1.16 from Escherichia coli
FadI / b2342: 3-ketoacyl-CoA thiolase FadI (EC 2.3.1.16) from Escherichia coli
fadI / P76503: 3-ketoacyl-CoA thiolase FadI (EC 2.3.1.16) from Escherichia coli
fadI / A0A140N9I7: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Escherichia coli

72% id,
100% cov

ECHB_MOUSE / Q99JY0: Trifunctional enzyme subunit beta, mitochondrial; TP-beta; EC 2.3.1.155; EC 2.3.1.16 from Mus musculus

41% id,
88% cov

ECHB_RAT / Q60587: Trifunctional enzyme subunit beta, mitochondrial; TP-beta; EC 2.3.1.155; EC 2.3.1.16 from Rattus norvegicus

41% id,
88% cov

More...

Shew_2858: acetyl-CoA acetyltransferase (RefSeq)
is similar to:
PaperBLAST

FADA_BACSU / O32177: 3-ketoacyl-CoA thiolase; Acetyl-CoA acyltransferase; Beta-ketothiolase; EC 2.3.1.16 from Bacillus subtilis

46% id,
100% cov

phbA / P14611: acetyl-CoA acetyltransferase subunit (EC 2.3.1.16) from Cupriavidus necator

43% id,
98% cov

phaA / Q3IZW1: acetyl-CoA acetyltransferase (EC 2.3.1.16) from Cereibacter sphaeroides

40% id,
99% cov

More...

Shew_2425: multifunctional fatty acid oxidation complex subunit alpha (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

45% id,
94% cov

Shew_0019: multifunctional fatty acid oxidation complex subunit alpha (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

34% id,
94% cov

Shew_2864: 3-hydroxyacyl-CoA dehydrogenase, NAD-binding (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

32% id,
94% cov

Shew_1605: beta-ketoacyl synthase (RefSeq)
is similar to:
PaperBLAST

thl / P45359: acetoacetyl-CoA thiolase monomer (EC 2.3.1.16) from Clostridium acetobutylicum

26% id,
34% cov

Msed_0656 / A4YEH9: acetyl-CoA C-acetyltransferase (EC 2.3.1.16) from Metallosphaera sedula

30% id,
29% cov

PS417_10515 / A0A1N7U0F8: acetyl-CoA C-acetyltransferase (EC 2.3.1.16) from Pseudomonas simiae

26% id,
32% cov

More...

Shew_1670: enoyl-CoA hydratase (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

36% id,
24% cov

Shew_0540: enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

26% id,
33% cov

Shew_3523: 3-oxoacyl-(acyl carrier protein) synthase I (RefSeq)
is similar to:
PaperBLAST

FADA_BACSU / O32177: 3-ketoacyl-CoA thiolase; Acetyl-CoA acyltransferase; Beta-ketothiolase; EC 2.3.1.16 from Bacillus subtilis

27% id,
29% cov

ECHB_MOUSE / Q99JY0: Trifunctional enzyme subunit beta, mitochondrial; TP-beta; EC 2.3.1.155; EC 2.3.1.16 from Mus musculus

35% id,
11% cov

ECHB_RAT / Q60587: Trifunctional enzyme subunit beta, mitochondrial; TP-beta; EC 2.3.1.155; EC 2.3.1.16 from Rattus norvegicus

35% id,
11% cov

Shew_0454: enoyl-CoA hydratase (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

26% id,
30% cov

Shew_2786: sterol-binding domain-containing protein (RefSeq)
is similar to:
PaperBLAST

SCP2_CHICK / Q07598: Sterol carrier protein 2; SCP-2; Acetyl-CoA C-myristoyltransferase; Non-specific lipid-transfer protein; NSL-TP; Propanoyl-CoA C-acyltransferase; SCP-2/3-oxoacyl-CoA thiolase; SCP-2/thiolase; SCP-chi; SCPX; Sterol carrier protein X; SCP-X; EC 2.3.1.155; EC 2.3.1.176; EC 2.3.1.16 from Gallus gallus

29% id,
17% cov

SCP2_MOUSE / P32020: Sterol carrier protein 2; SCP-2; Acetyl-CoA C-myristoyltransferase; Non-specific lipid-transfer protein; NSL-TP; Propanoyl-CoA C-acyltransferase; SCP-2/3-oxoacyl-CoA thiolase; SCP-2/thiolase; SCP-chi; Sterol carrier protein X; SCP-X; EC 2.3.1.155; EC 2.3.1.176; EC 2.3.1.16 from Mus musculus

27% id,
17% cov

SCP2_RABIT / O62742: Sterol carrier protein 2; SCP-2; Acetyl-CoA C-myristoyltransferase; Non-specific lipid-transfer protein; NSL-TP; Propanoyl-CoA C-acyltransferase; SCP-2/3-oxoacyl-CoA thiolase; SCP-2/thiolase; SCP-chi; SCPX; Sterol carrier protein X; SCP-X; EC 2.3.1.155; EC 2.3.1.176; EC 2.3.1.16 from Oryctolagus cuniculus

27% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory