Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 116 curated entries in PaperBLAST's database that match '2.3.1.9'.

These curated entries have 97 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0018: 3-ketoacyl-CoA thiolase (RefSeq)
is similar to:
PaperBLAST

fadA / Q88L01: FadA (EC 2.3.1.16; EC 2.3.1.9) from Pseudomonas putida

68% id,
99% cov

AtoB / b2224: acetyl-CoA acetyltransferase (EC 2.3.1.16; EC 2.3.1.9) from Escherichia coli

45% id,
99% cov

AO356_21640: acetyl-CoA C-acetyltransferase [EC: 2.3.1.9] from Pseudomonas fluorescens

44% id,
100% cov

More...

Shew_1667: acetyl-CoA acetyltransferase (RefSeq)
is similar to:
PaperBLAST

AO353_25685: acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) from Pseudomonas fluorescens

62% id,
99% cov

P45359: acetyl-CoA C-acetyltransferase (EC 2.3.1.9) from Clostridium acetobutylicum

52% id,
99% cov

AtoB / b2224: acetyl-CoA acetyltransferase (EC 2.3.1.16; EC 2.3.1.9) from Escherichia coli

52% id,
99% cov

More...

Shew_2858: acetyl-CoA acetyltransferase (RefSeq)
is similar to:
PaperBLAST

THIL_CUPNH / P14611: Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Beta-ketothiolase; EC 2.3.1.9 from Cupriavidus necator

43% id,
98% cov

THIL_RHIME / P50174: Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Beta-ketothiolase; EC 2.3.1.9 from Rhizobium meliloti
SMc03879: Acetyl-CoA acetyltransferase (EC 2.3.1.9) from Sinorhizobium meliloti

41% id,
98% cov

AtoB / b2224: acetyl-CoA acetyltransferase (EC 2.3.1.16; EC 2.3.1.9) from Escherichia coli

40% id,
99% cov

More...

Shew_2426: 3-ketoacyl-CoA thiolase (RefSeq)
is similar to:
PaperBLAST

THIL_ZOORA / P07097: Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Beta-ketothiolase; EC 2.3.1.9 from Zoogloea ramigera

36% id,
98% cov

PGA1_c03400: acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) from Phaeobacter inhibens

34% id,
99% cov

AtoB / b2224: acetyl-CoA acetyltransferase (EC 2.3.1.16; EC 2.3.1.9) from Escherichia coli

34% id,
98% cov

More...

Shew_1605: beta-ketoacyl synthase (RefSeq)
is similar to:
PaperBLAST

B1YB71: acetyl-CoA C-acetyltransferase (EC 2.3.1.9) from Pyrobaculum neutrophilum

27% id,
52% cov

P45359: acetyl-CoA C-acetyltransferase (EC 2.3.1.9) from Clostridium acetobutylicum

26% id,
34% cov

A4YEH9: acetyl-CoA C-acetyltransferase (EC 2.3.1.9) from Metallosphaera sedula

30% id,
29% cov

More...

Shew_0853: ABC transporter-related protein (RefSeq)
is similar to:
PaperBLAST

B1YB71: acetyl-CoA C-acetyltransferase (EC 2.3.1.9) from Pyrobaculum neutrophilum

31% id,
33% cov

Shew_2665: beta-ketoacyl synthase (RefSeq)
is similar to:
PaperBLAST

ERYA3_SACER / Q03133: 6-deoxyerythronolide-B synthase EryA3, modules 5 and 6; DEBS 3; 6-deoxyerythronolide B synthase III; Erythronolide synthase; ORF C; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03133: 6-deoxyerythronolide-B synthase (EC 2.3.1.94) from Saccharopolyspora erythraea

27% id,
23% cov

ERYA1_SACER / Q03131: 6-deoxyerythronolide-B synthase EryA1, modules 1 and 2; DEBS 1; 6-deoxyerythronolide B synthase I; Erythronolide synthase; ORF C; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03131: 6-deoxyerythronolide-B synthase (subunit 3/3) (EC 2.3.1.94) from Saccharopolyspora erythraea

28% id,
20% cov

ERYA2_SACER / Q03132: 6-deoxyerythronolide-B synthase EryA2, modules 3 and 4; DEBS 2; 6-deoxyerythronolide B synthase II; Erythronolide synthase; ORF B; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03132: 6-deoxyerythronolide-B synthase (subunit 2/3) (EC 2.3.1.94) from Saccharopolyspora erythraea

30% id,
13% cov

More...

Shew_2667: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq)
is similar to:
PaperBLAST

ERYA1_SACER / Q03131: 6-deoxyerythronolide-B synthase EryA1, modules 1 and 2; DEBS 1; 6-deoxyerythronolide B synthase I; Erythronolide synthase; ORF C; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03131: 6-deoxyerythronolide-B synthase (subunit 3/3) (EC 2.3.1.94) from Saccharopolyspora erythraea

31% id,
12% cov

ERYA3_SACER / Q03133: 6-deoxyerythronolide-B synthase EryA3, modules 5 and 6; DEBS 3; 6-deoxyerythronolide B synthase III; Erythronolide synthase; ORF C; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03133: 6-deoxyerythronolide-B synthase (EC 2.3.1.94) from Saccharopolyspora erythraea

31% id,
11% cov

ERYA2_SACER / Q03132: 6-deoxyerythronolide-B synthase EryA2, modules 3 and 4; DEBS 2; 6-deoxyerythronolide B synthase II; Erythronolide synthase; ORF B; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03132: 6-deoxyerythronolide-B synthase (subunit 2/3) (EC 2.3.1.94) from Saccharopolyspora erythraea

32% id,
8% cov

Shew_3523: 3-oxoacyl-(acyl carrier protein) synthase I (RefSeq)
is similar to:
PaperBLAST

ERYA3_SACER / Q03133: 6-deoxyerythronolide-B synthase EryA3, modules 5 and 6; DEBS 3; 6-deoxyerythronolide B synthase III; Erythronolide synthase; ORF C; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03133: 6-deoxyerythronolide-B synthase (EC 2.3.1.94) from Saccharopolyspora erythraea

28% id,
11% cov

ERYA2_SACER / Q03132: 6-deoxyerythronolide-B synthase EryA2, modules 3 and 4; DEBS 2; 6-deoxyerythronolide B synthase II; Erythronolide synthase; ORF B; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03132: 6-deoxyerythronolide-B synthase (subunit 2/3) (EC 2.3.1.94) from Saccharopolyspora erythraea

28% id,
10% cov

Shew_1602: malonyl CoA-acyl carrier protein transacylase (RefSeq)
is similar to:
PaperBLAST

ERYA3_SACER / Q03133: 6-deoxyerythronolide-B synthase EryA3, modules 5 and 6; DEBS 3; 6-deoxyerythronolide B synthase III; Erythronolide synthase; ORF C; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03133: 6-deoxyerythronolide-B synthase (EC 2.3.1.94) from Saccharopolyspora erythraea

30% id,
9% cov

ERYA2_SACER / Q03132: 6-deoxyerythronolide-B synthase EryA2, modules 3 and 4; DEBS 2; 6-deoxyerythronolide B synthase II; Erythronolide synthase; ORF B; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03132: 6-deoxyerythronolide-B synthase (subunit 2/3) (EC 2.3.1.94) from Saccharopolyspora erythraea

26% id,
8% cov

Shew_3526: 3-oxoacyl-(acyl carrier protein) synthase II (RefSeq)
is similar to:
PaperBLAST

ERYA3_SACER / Q03133: 6-deoxyerythronolide-B synthase EryA3, modules 5 and 6; DEBS 3; 6-deoxyerythronolide B synthase III; Erythronolide synthase; ORF C; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03133: 6-deoxyerythronolide-B synthase (EC 2.3.1.94) from Saccharopolyspora erythraea

30% id,
9% cov

ERYA2_SACER / Q03132: 6-deoxyerythronolide-B synthase EryA2, modules 3 and 4; DEBS 2; 6-deoxyerythronolide B synthase II; Erythronolide synthase; ORF B; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03132: 6-deoxyerythronolide-B synthase (subunit 2/3) (EC 2.3.1.94) from Saccharopolyspora erythraea

29% id,
9% cov

Shew_3274: alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ERYA2_SACER / Q03132: 6-deoxyerythronolide-B synthase EryA2, modules 3 and 4; DEBS 2; 6-deoxyerythronolide B synthase II; Erythronolide synthase; ORF B; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03132: 6-deoxyerythronolide-B synthase (subunit 2/3) (EC 2.3.1.94) from Saccharopolyspora erythraea

30% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3140187-3148070 (frame +3) on 113993
is similar to:
PaperBLAST

ERYA3_SACER / Q03133: 6-deoxyerythronolide-B synthase EryA3, modules 5 and 6; DEBS 3; 6-deoxyerythronolide B synthase III; Erythronolide synthase; ORF C; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03133: 6-deoxyerythronolide-B synthase (EC 2.3.1.94) from Saccharopolyspora erythraea
Also see hits to annotated proteins above

27% id,
24% cov

ERYA1_SACER / Q03131: 6-deoxyerythronolide-B synthase EryA1, modules 1 and 2; DEBS 1; 6-deoxyerythronolide B synthase I; Erythronolide synthase; ORF C; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03131: 6-deoxyerythronolide-B synthase (subunit 3/3) (EC 2.3.1.94) from Saccharopolyspora erythraea
Also see hits to annotated proteins above

29% id,
20% cov

3150181-3156003 (frame +1) on 113993
is similar to:
PaperBLAST

ERYA1_SACER / Q03131: 6-deoxyerythronolide-B synthase EryA1, modules 1 and 2; DEBS 1; 6-deoxyerythronolide B synthase I; Erythronolide synthase; ORF C; EC 2.3.1.94 from Saccharopolyspora erythraea
Q03131: 6-deoxyerythronolide-B synthase (subunit 3/3) (EC 2.3.1.94) from Saccharopolyspora erythraea
Also see hits to annotated proteins above

30% id,
13% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory