Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 38 curated entries in PaperBLAST's database that match '2.3.3.13' as complete word(s).

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3472: 2-isopropylmalate synthase (RefSeq)
is similar to:
PaperBLAST

LEU1_SALTY / P15875: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Salmonella typhimurium

66% id,
100% cov

LeuA / b0074: 2-isopropylmalate synthase (EC 2.3.3.13) from Escherichia coli
leuA / P09151: 2-isopropylmalate synthase (EC 2.3.3.13) from Escherichia coli

66% id,
98% cov

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

53% id,
97% cov

More...

Shew_1220: pyruvate carboxylase subunit B (RefSeq)
is similar to:
PaperBLAST

LEU1_METJA / Q58595: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Methanocaldococcus jannaschii
Q58595: 2-isopropylmalate synthase (EC 2.3.3.13) from Methanocaldococcus jannaschii

23% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory