Searching in Shewanella loihica PV-4 (PV4)
Found 35 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).
These curated entries have 22 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Shewanella loihica PV-4, or try another query
| Shew_1275: malate synthase (RefSeq) is similar to: | PaperBLAST |
SO1483: Malate synthase (EC 2.3.3.9) from Shewanella oneidensis | 82% id, 99% cov |
Mas / b4014: malate synthase A (EC 2.3.3.9) from Escherichia coli | 68% id, 100% cov |
BPHYT_RS12305: Malate synthase (EC 2.3.3.9) from Burkholderia phytofirmans | 50% id, 98% cov |
| Shew_1276: isocitrate lyase (RefSeq) is similar to: | PaperBLAST |
GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans | 60% id, 43% cov |
| Shew_2559: malate synthase (RefSeq) is similar to: | PaperBLAST |
MASZ_ECOLI / P37330: Malate synthase G; MSG; EC 2.3.3.9 from Escherichia coli | 36% id, 19% cov |
MASZ_MYCTO / P9WK16: Malate synthase G; EC 2.3.3.9 from Mycobacterium tuberculosis | 34% id, 19% cov |
Psest_0354: Malate synthase G (EC 2.3.3.9) from Pseudomonas stutzeri | 33% id, 19% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 3016227-3016823 (frame -2) on 113993 is similar to: | PaperBLAST |
MASZ_MYCTO / P9WK16: Malate synthase G; EC 2.3.3.9 from Mycobacterium tuberculosis | 31% id, 25% cov |
MASZ_ECOLI / P37330: Malate synthase G; MSG; EC 2.3.3.9 from Escherichia coli | 34% id, 20% cov |
Lawrence Berkeley National Laboratory