Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 63 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 44 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2812: purine nucleoside phosphorylase (RefSeq)
is similar to:

DEOD_SALTY / Q8ZJV7: Purine nucleoside phosphorylase DeoD-type; PNP; EC from Salmonella typhimurium

71% id,
98% cov

DEOD_ECOLI / P0ABP8: Purine nucleoside phosphorylase DeoD-type; PNP; EC from Escherichia coli
Pup / b4384: purine nucleoside phosphorylase (EC; EC from Escherichia coli
deoD / RF|NP_418801: purine nucleoside phosphorylase deoD-type; EC from Escherichia coli
deoD / P0ABP8: purine nucleoside phosphorylase (EC; EC from Escherichia coli

70% id,
98% cov

C8CPR9: purine-nucleoside phosphorylase (EC from Pseudoalteromonas sp.

62% id,
100% cov


Shew_2949: hypothetical protein (RefSeq)
is similar to:

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC; EC; EC 1.10.3.-; EC from Escherichia coli
yfiH / P33644: purine nucleoside phosphorylase YfiH (EC; EC; EC; EC from Escherichia coli

49% id,
98% cov

PURNU_UNKP / Q1EIR0: Adenosine deaminase RL5; Laccase RL5; Multicopper oxidase RL5; Polyphenol oxidase; Purine nucleoside phosphorylase RL5; S-methyl-5'-thioadenosine phosphorylase RL5; EC; EC 1.10.3.-; EC; EC from Unknown prokaryotic

31% id,
94% cov

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC; EC; EC from Geobacillus stearothermophilus

30% id,
91% cov


Shew_2831: Triose-phosphate isomerase (RefSeq)
is similar to:

P00941: purine-nucleoside phosphorylase (EC from Homo sapiens

40% id,
98% cov

Shew_2813: phosphopentomutase (RefSeq)
is similar to:

A0A518Y5Z2: purine-nucleoside phosphorylase (EC from Helicobacter pylori

59% id,
63% cov

Shew_3390: uridine phosphorylase (RefSeq)
is similar to:

PNPH_SACS2 / P50389: Purine nucleoside phosphorylase; PNP; 5'-methylthioadenosine phosphorylase I; MTA phosphorylase I; MTAPI; EC; EC from Saccharolobus solfataricus

34% id,
92% cov

deoD: purine nucleoside phosphorylase; EC from Bacillus anthracis

33% id,
94% cov

Q72IR2: purine-nucleoside phosphorylase (EC from Thermus thermophilus

29% id,
95% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory