Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 25 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3390: uridine phosphorylase (RefSeq)
is similar to:

Udp / b3831: uridine phosphorylase (EC; EC from Escherichia coli
udp / P12758: uridine phosphorylase (EC from Escherichia coli

76% id,
99% cov

TK1479 / Q5JJC1: uridine phosphorylase (EC from Thermococcus kodakarensis

44% id,
83% cov

Q5XA29: pyrimidine-nucleoside phosphorylase (EC from Streptococcus pyogenes

36% id,
93% cov

Shew_2814: thymidine phosphorylase (RefSeq)
is similar to:

Ttg / b4382: thymidine phosphorylase (EC; EC; EC from Escherichia coli
deoA / P07650: thymidine phosphorylase (EC; EC from Escherichia coli

68% id,
100% cov

A0A0E2M090: pyrimidine-nucleoside phosphorylase (EC from Lacticaseibacillus paracasei

43% id,
99% cov

PDP_BACSU / P39142: Pyrimidine-nucleoside phosphorylase; PYNP; Py-NPase; EC from Bacillus subtilis
pdp / GB|CAB15976.2: pyrimidine-nucleoside phosphorylase; EC from Bacillus subtilis

43% id,
97% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory