Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 11 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2814: thymidine phosphorylase (RefSeq)
is similar to:

Ttg / b4382: thymidine phosphorylase (EC; EC; EC from Escherichia coli
deoA / GB|AAC77335.1: thymidine phosphorylase; EC from Escherichia coli
P07650: thymidine phosphorylase (EC from Escherichia coli

68% id,
100% cov

Q7CP66: thymidine phosphorylase (EC from Salmonella enterica

68% id,
100% cov

TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC from Homo sapiens
P19971: thymidine phosphorylase (EC from Homo sapiens

38% id,
90% cov


Shew_0419: glyceraldehyde-3-phosphate dehydrogenase (RefSeq)
is similar to:

TYPH_LACRH / P19663: Thymidine phosphorylase; TdRPase; EC from Lacticaseibacillus rhamnosus

62% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory