Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 73 curated entries in PaperBLAST's database that match '2.5.1.47' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2382: cysteine synthase A (RefSeq)
is similar to:
PaperBLAST

CYSK_ECOLI / P0ABK5: Cysteine synthase A; CSase A; O-acetylserine (thiol)-lyase A; OAS-TL A; O-acetylserine sulfhydrylase A; S-carboxymethylcysteine synthase; Sulfate starvation-induced protein 5; SSI5; EC 2.5.1.47; EC 4.5.1.5 from Escherichia coli
Ssi5 / b2414: cysteine synthase A (EC 2.5.1.47; EC 4.4.1.1; EC 4.4.1.28) from Escherichia coli
cysK / P0ABK5: cysteine synthase A (EC 2.5.1.47; EC 4.4.1.1) from Escherichia coli
P0ABK5: cysteine synthase (EC 2.5.1.47) from Escherichia coli

75% id,
100% cov

CYSK_SALTY / P0A1E3: Cysteine synthase A; CSase A; O-acetylserine (thiol)-lyase A; OAS-TL A; O-acetylserine sulfhydrylase A; EC 2.5.1.47 from Salmonella typhimurium
P0A1E3: cysteine synthase (EC 2.5.1.47) from Salmonella enterica

74% id,
100% cov

P45040: cysteine synthase (EC 2.5.1.47) from Haemophilus influenzae

72% id,
99% cov

More...

Shew_2710: O-acetylhomoserine/O-acetylserine sulfhydrylase (RefSeq)
is similar to:
PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

48% id,
97% cov

Shew_2060: pyridoxal-5'-phosphate-dependent enzyme, beta subunit (RefSeq)
is similar to:
PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactobacillus plantarum

29% id,
94% cov

DCSD_STRLA / D2Z027: O-ureido-L-serine synthase; Cysteine synthase homolog DscD; O-acetylserine sulfhydrylase; EC 2.6.99.3; EC 2.5.1.47 from Streptomyces lavendulae
dcsD / D2Z027: O-ureido-L-serine synthase (EC 2.5.1.47; EC 2.6.99.3) from Streptomyces lavendulae
D2Z027: cysteine synthase (EC 2.5.1.47); O-ureido-L-serine synthase (EC 2.6.99.3) from Streptomyces lavendulae

28% id,
92% cov

CYSK2_CAEEL / O45679: Bifunctional L-3-cyanoalanine synthase/cysteine synthase; CAS; O-acetylserine (thiol)-lyase 2; OAS-TL; EC 2.5.1.47; EC 4.4.1.9 from Caenorhabditis elegans
O45679: cysteine synthase (EC 2.5.1.47) from Caenorhabditis elegans

26% id,
89% cov

More...

Shew_1789: cystathionine beta-lyase (RefSeq)
is similar to:
PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

26% id,
94% cov

Shew_0293: threonine dehydratase (RefSeq)
is similar to:
PaperBLAST

Q2PZM5: cysteine synthase (EC 2.5.1.47) from Azospirillum brasilense

25% id,
92% cov

O81154: cysteine synthase (EC 2.5.1.47) from Solanum tuberosum

23% id,
98% cov

A3RM03: cysteine synthase (EC 2.5.1.47) from Glycine max

24% id,
97% cov

More...

Shew_2491: methionine gamma-lyase (RefSeq)
is similar to:
PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

38% id,
49% cov

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

34% id,
43% cov

Shew_0520: O-succinylhomoserine (thiol)-lyase (RefSeq)
is similar to:
PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

37% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory