Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 26 curated entries in PaperBLAST's database that match '2.5.1.54' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0851: phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq)
is similar to:
PaperBLAST

AroG / b0754: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
aroG / P0AB91: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
P0AB91: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Escherichia coli

75% id,
100% cov

Q9K169: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Neisseria meningitidis

68% id,
96% cov

2-dehydro-3-deoxyphosphoheptonate aldolase / b1704: 3-deoxy-7-phosphoheptulonate synthase, Trp-sensitive (EC 2.5.1.54) from Escherichia coli
aroH / P00887: 3-deoxy-7-phosphoheptulonate synthase, Trp-sensitive (EC 2.5.1.54) from Escherichia coli

57% id,
99% cov

More...

Shew_1547: phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq)
is similar to:
PaperBLAST

2-dehydro-3-deoxyphosphoheptonate aldolase / b1704: 3-deoxy-7-phosphoheptulonate synthase, Trp-sensitive (EC 2.5.1.54) from Escherichia coli
aroH / P00887: 3-deoxy-7-phosphoheptulonate synthase, Trp-sensitive (EC 2.5.1.54) from Escherichia coli

65% id,
99% cov

AroG / b0754: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
aroG / P0AB91: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
P0AB91: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Escherichia coli

56% id,
99% cov

Q9K169: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Neisseria meningitidis

53% id,
98% cov

More...

Shew_1067: phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq)
is similar to:
PaperBLAST

AroF / b2601: 3-deoxy-7-phosphoheptulonate synthase, Tyr-sensitive (EC 2.5.1.54) from Escherichia coli
aroF / P00888: 3-deoxy-7-phosphoheptulonate synthase, Tyr-sensitive (EC 2.5.1.54) from Escherichia coli
P00888: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Escherichia coli

64% id,
100% cov

AroG / b0754: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
aroG / P0AB91: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
P0AB91: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Escherichia coli

55% id,
98% cov

Q9K169: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Neisseria meningitidis

54% id,
97% cov

More...

Shew_1072: chorismate mutase (RefSeq)
is similar to:
PaperBLAST

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

32% id,
90% cov

Q8U0A9: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Pyrococcus furiosus

30% id,
94% cov

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Thermotoga maritima

29% id,
69% cov

Shew_2904: 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq)
is similar to:
PaperBLAST

Q8U0A9: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Pyrococcus furiosus

27% id,
96% cov

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

26% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3443659-3444546 (frame -1) on 113993
is similar to:
PaperBLAST

Q8U0A9: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Pyrococcus furiosus
Also see hits to annotated proteins above

27% id,
98% cov

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix
Also see hits to annotated proteins above

26% id,
90% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory