Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 34 curated entries in PaperBLAST's database that match '2.6.1.57' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0291: branched-chain amino acid aminotransferase (RefSeq)
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

66% id,
99% cov

Shew_1999: aromatic amino acid aminotransferase (RefSeq)
is similar to:
PaperBLAST

AspC / b0928: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli

62% id,
100% cov

HP15_858: phenylalanine aminotransferase (EC 2.6.1.57) from Marinobacter adhaerens

49% id,
99% cov

AO356_03985: L-phenylalanine transaminase (EC 2.6.1.57) from Pseudomonas fluorescens

48% id,
99% cov

More...

Shew_1951: aromatic amino acid aminotransferase (RefSeq)
is similar to:
PaperBLAST

AspC / b0928: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli

50% id,
100% cov

HP15_858: phenylalanine aminotransferase (EC 2.6.1.57) from Marinobacter adhaerens

49% id,
99% cov

Pf6N2E2_2632: tyrosine aminotransferase (EC 2.6.1.57) from Pseudomonas fluorescens

50% id,
98% cov

More...

Shew_1914: aminotransferase AlaT (RefSeq)
is similar to:
PaperBLAST

ARAT2_THELN / H3ZPU1: Aromatic-amino-acid aminotransferase 2; ARAT-II; AROAT; EC 2.6.1.57 from Thermococcus litoralis

29% id,
94% cov

O59096: aromatic-amino-acid transaminase (EC 2.6.1.57) from Pyrococcus horikoshii

29% id,
94% cov

bacF / P39643: 3-[(2S,5R)-5-hydroxy-7-oxabicyclo[4.1.0]heptan-2-yl]-2-oxopropanoate aminotransferase (EC 2.6.1.57) from Bacillus subtilis

27% id,
90% cov

More...

Shew_2199: histidinol-phosphate aminotransferase (RefSeq)
is similar to:
PaperBLAST

BPHYT_RS14905: Aromatic-amino-acid transaminase (EC 2.6.1.57) from Burkholderia phytofirmans

32% id,
82% cov

Shew_2535: pyridoxal-dependent decarboxylase (RefSeq)
is similar to:
PaperBLAST

H7CE71: aromatic-amino-acid transaminase (EC 2.6.1.57) from Rosa hybrid

21% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory