Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 114 curated entries in PaperBLAST's database that match '2.7.1.1' as complete word(s).

These curated entries have 79 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1428: fructokinase (RefSeq)
is similar to:
PaperBLAST

Q5RLG0: hexokinase (EC 2.7.1.1) from Thermus caldophilus

33% id,
96% cov

Q5SLJ4: hexokinase (EC 2.7.1.1) from Thermus thermophilus

33% id,
96% cov

glk / Q9X1I0: glucokinase subunit (EC 2.7.1.1) from Thermotoga maritima

33% id,
95% cov

More...

Shew_1116: ATPase, BadF/BadG/BcrA/BcrD type (RefSeq)
is similar to:
PaperBLAST

Q96Y14: hexokinase (EC 2.7.1.1) from Sulfurisphaera tokodaii

28% id,
96% cov

Shew_0954: ROK family protein (RefSeq)
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

27% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory