Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0696: ribokinase (RefSeq)
is similar to:
PaperBLAST

A0A0H2UL04: ribokinase (EC 2.7.1.15) from Vibrio cholerae

52% id,
96% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

49% id,
95% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

47% id,
97% cov

More...

Shew_2725: ribokinase-like domain-containing protein (RefSeq)
is similar to:
PaperBLAST

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

29% id,
92% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
99% cov

BT2804: ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron

26% id,
97% cov

More...

Shew_0078: ribokinase-like domain-containing protein (RefSeq)
is similar to:
PaperBLAST

P71913: ribokinase (EC 2.7.1.15) from Mycobacterium tuberculosis

23% id,
77% cov

RBSK_YEAST / P25332: Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae

25% id,
43% cov

BT2803: ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron

24% id,
36% cov

More...

Shew_0659: bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq)
is similar to:
PaperBLAST

RBSK_HUMAN / Q9H477: Ribokinase; RK; EC 2.7.1.15 from Homo sapiens
Q9H477: ribokinase (EC 2.7.1.15) from Homo sapiens

31% id,
45% cov

Shew_0825: ribose-5-phosphate isomerase A (RefSeq)
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

34% id,
42% cov

Shew_2095: phosphomethylpyrimidine kinase (RefSeq)
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

28% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory