Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 9 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1608: carbohydrate kinase, FGGY (RefSeq)
is similar to:

CA265_RS08625: Ribulokinase (EC from Pedobacter sp.

28% id,
37% cov

Shew_3466: glycerol kinase (RefSeq)
is similar to:

ARAB_BACSU / P94524: Ribulokinase; EC from Bacillus subtilis

33% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory