Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 37 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1428: fructokinase (RefSeq)
is similar to:

Sama_2231: glucokinase (EC from Shewanella amazonensis

77% id,
99% cov

Sama_1405: glucokinase (EC from Shewanella amazonensis

72% id,
95% cov

GLK_THEMA / Q9X1I0: Glucokinase; ATP-dependent glucokinase; ATP-GLK; Glucose kinase; EC from Thermotoga maritima

33% id,
95% cov


Shew_0954: ROK family protein (RefSeq)
is similar to:

glk: glucokinase; EC from Bacillus megaterium
O31392: glucokinase (EC from Bacillus megaterium

33% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory