Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 19 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1080: homoserine kinase (RefSeq)
is similar to:

KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC from Escherichia coli
ThrB / b0003: homoserine kinase (EC from Escherichia coli
thrB / GB|BAB96580.2: homoserine kinase; EC from Escherichia coli
thrB / P00547: homoserine kinase (EC from Escherichia coli

56% id,
99% cov

Echvi_2001: homoserine kinase (EC from Echinicola vietnamensis

35% id,
93% cov

N515DRAFT_0576: homoserine kinase (EC from Dyella japonica

36% id,
87% cov


Shew_0213: shikimate kinase I (RefSeq)
is similar to:

thrB / B8DPL9: homoserine kinase (EC from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC: from Desulfovibrio vulgaris

30% id,
86% cov

Shew_2915: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (RefSeq)
is similar to:

CA265_RS23470: homoserine kinase (EC from Pedobacter sp.

29% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory