Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 18 curated entries in PaperBLAST's database that match '2.7.1.45' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2725: ribokinase-like domain-containing protein (RefSeq)
is similar to:
PaperBLAST

CA265_RS19865: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) from Pedobacter sp.

25% id,
91% cov

Shew_0696: ribokinase (RefSeq)
is similar to:
PaperBLAST

KDGK_ECOLI / P37647: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Escherichia coli
YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli

23% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory