Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 9 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1428: fructokinase (RefSeq)
is similar to:

Mak / b0394: fructokinase (EC; EC from Escherichia coli
mak / P23917: fructokinase (EC; EC from Escherichia coli

61% id,
99% cov

SMc03109: Mannokinase (EC from Sinorhizobium meliloti

50% id,
99% cov

Shew_0954: ROK family protein (RefSeq)
is similar to:

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC; EC; EC from Bacteroides fragilis

27% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory