Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 13 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2725: ribokinase-like domain-containing protein (RefSeq)
is similar to:

BWI76_RS03085: 5-dehydro-2-deoxygluconokinase (EC; possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC from Klebsiella michiganensis

35% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory