Searching in Shewanella loihica PV-4 (PV4)
Found 78 curated entries in PaperBLAST's database that match '2.7.2.1'.
These curated entries have 52 distinct sequences.
Running ublast with E ≤ 0.01
Found 7 relevant proteins in Shewanella loihica PV-4, or try another query
Shew_2393: acetate kinase (RefSeq) is similar to: | PaperBLAST |
E3W769: acetate kinase (EC 2.7.2.1) from Shewanella sp. | 82% id, 99% cov |
ACKA_ECOLI / P0A6A3: Acetate kinase; Acetokinase; EC 2.7.2.1 from Escherichia coli | 64% id, 100% cov |
ACKA_SALTY / P63411: Acetate kinase AckA; Acetokinase; EC 2.7.2.1 from Salmonella typhimurium | 63% id, 100% cov |
Shew_2848: gamma-glutamyl kinase (RefSeq) is similar to: | PaperBLAST |
PROB_ECOLI / P0A7B5: Glutamate 5-kinase; Gamma-glutamyl kinase; GK; EC 2.7.2.11 from Escherichia coli | 62% id, 99% cov |
P9WHU9: glutamate 5-kinase (EC 2.7.2.11) from Mycobacterium tuberculosis | 42% id, 95% cov |
Q6E235: glutamate 5-kinase (EC 2.7.2.11) from Bacillus subtilis | 40% id, 97% cov |
Shew_3014: gamma-glutamyl kinase (RefSeq) is similar to: | PaperBLAST |
proB: glutamate 5-kinase; EC 2.7.2.11 from Campylobacter jejuni | 35% id, 99% cov |
PROB_ECOLI / P0A7B5: Glutamate 5-kinase; Gamma-glutamyl kinase; GK; EC 2.7.2.11 from Escherichia coli | 35% id, 96% cov |
G5K_LEIDO / A0A0R6Y3I5: Glutamate 5-kinase; LdG5K; Gamma-glutamyl kinase; EC 2.7.2.11 from Leishmania donovani | 35% id, 95% cov |
Shew_1249: phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) is similar to: | PaperBLAST |
PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli | 25% id, 80% cov |
Shew_2847: gamma-glutamyl phosphate reductase (RefSeq) is similar to: | PaperBLAST |
P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana | 37% id, 55% cov |
P5CS_HUMAN / P54886: Delta-1-pyrroline-5-carboxylate synthase; P5CS; Aldehyde dehydrogenase family 18 member A1; EC 2.7.2.11; EC 1.2.1.41 from Homo sapiens | 37% id, 52% cov |
P5CS_MOUSE / Q9Z110: Delta-1-pyrroline-5-carboxylate synthase; P5CS; Aldehyde dehydrogenase family 18 member A1; EC 2.7.2.11; EC 1.2.1.41 from Mus musculus | 37% id, 52% cov |
Shew_3015: gamma-glutamyl phosphate reductase (RefSeq) is similar to: | PaperBLAST |
P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana | 35% id, 57% cov |
P5CS1_ORYSJ / O04226: Delta-1-pyrroline-5-carboxylate synthase 1; OsP5CS1; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa | 35% id, 57% cov |
P5CS_HUMAN / P54886: Delta-1-pyrroline-5-carboxylate synthase; P5CS; Aldehyde dehydrogenase family 18 member A1; EC 2.7.2.11; EC 1.2.1.41 from Homo sapiens | 37% id, 51% cov |
Shew_3365: acetyl-CoA carboxylase, biotin carboxylase (RefSeq) is similar to: | PaperBLAST |
PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli | 22% id, 77% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 9 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
1008648-1009523 (frame -2) on 113993 is similar to: | PaperBLAST |
PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli | 71% id, 72% cov |
4011855-4013252 (frame +3) on 113993 is similar to: | PaperBLAST |
PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli | 22% id, 79% cov |
1008334-1008678 (frame -1) on 113993 is similar to: | PaperBLAST |
PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli | 60% id, 27% cov |
Lawrence Berkeley National Laboratory