Searching in Shewanella loihica PV-4 (PV4)
Found 28 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).
These curated entries have 21 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Shewanella loihica PV-4, or try another query
| Shew_2393: acetate kinase (RefSeq) is similar to: | PaperBLAST |
E3W769: acetate kinase (EC 2.7.2.1) from Shewanella sp. | 82% id, 99% cov |
ACKA_ECOLI / P0A6A3: Acetate kinase; Acetokinase; EC 2.7.2.1 from Escherichia coli | 64% id, 100% cov |
ACKA_SALTY / P63411: Acetate kinase AckA; Acetokinase; EC 2.7.2.1 from Salmonella typhimurium | 63% id, 100% cov |
| Shew_1249: phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) is similar to: | PaperBLAST |
PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli | 25% id, 80% cov |
| Shew_3365: acetyl-CoA carboxylase, biotin carboxylase (RefSeq) is similar to: | PaperBLAST |
PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli | 22% id, 77% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 1008648-1009523 (frame -2) on 113993 is similar to: | PaperBLAST |
PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli | 71% id, 72% cov |
| 4011855-4013252 (frame +3) on 113993 is similar to: | PaperBLAST |
PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli | 22% id, 79% cov |
| 1008334-1008678 (frame -1) on 113993 is similar to: | PaperBLAST |
PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli | 60% id, 27% cov |
Lawrence Berkeley National Laboratory