Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 56 curated entries in PaperBLAST's database that match '2.7.2.4' as complete word(s).

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0779: aspartate kinase III (RefSeq)
is similar to:
PaperBLAST

AK3_ECOLI / P08660: Lysine-sensitive aspartokinase 3; Aspartate kinase III; AKIII; Lysine-sensitive aspartokinase III; EC 2.7.2.4 from Escherichia coli
Apk / b4024: aspartate kinase III (EC 2.7.2.4) from Escherichia coli
lysC / P08660: aspartate kinase III (EC 2.7.2.4) from Escherichia coli
P08660: aspartate kinase (EC 2.7.2.4) from Escherichia coli

59% id,
100% cov

Q57991: aspartate kinase (EC 2.7.2.4) from Methanocaldococcus jannaschii

35% id,
99% cov

Q9RUL9: aspartate kinase (EC 2.7.2.4) from Deinococcus radiodurans

33% id,
96% cov

More...

Shew_1079: bifunctional aspartokinase I/homeserine dehydrogenase I (RefSeq)
is similar to:
PaperBLAST

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli

57% id,
100% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

37% id,
100% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

35% id,
100% cov

More...

Shew_0521: bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq)
is similar to:
PaperBLAST

MetM / b3940: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
metL / P00562: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli

43% id,
99% cov

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli

30% id,
99% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

29% id,
99% cov

More...

Shew_0322: diaminopimelate decarboxylase (RefSeq)
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

35% id,
42% cov

Shew_3014: gamma-glutamyl kinase (RefSeq)
is similar to:
PaperBLAST

AK_MYCTU / P9WPX3: Aspartokinase; Aspartate kinase; ASK; EC 2.7.2.4 from Mycobacterium tuberculosis
P9WPX3: aspartate kinase (EC 2.7.2.4) from Mycobacterium tuberculosis

21% id,
65% cov

AK_CORFL / P41398: Aspartokinase; Aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens
lysC / GB|AAA23293.1: aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens

26% id,
36% cov

AK_CORGL / P26512: Aspartokinase; Aspartate kinase; EC 2.7.2.4 from Corynebacterium glutamicum
lysC: aspartate kinase 2; EC 2.7.2.4 from Corynebacterium glutamicum
lysCβ / P26512: aspartokinase β subunit (EC 2.7.2.4) from Corynebacterium glutamicum
lysCα / P26512: aspartokinase α subunit (EC 2.7.2.4) from Corynebacterium glutamicum
P26512: aspartate kinase (EC 2.7.2.4) from Corynebacterium glutamicum

26% id,
36% cov

More...

Shew_2633: uridylate kinase (RefSeq)
is similar to:
PaperBLAST

AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana

30% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory