Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 6 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2674: crotonobetainyl-CoA:carnitine CoA-transferase (RefSeq)
is similar to:

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC from Agrobacterium fabrum

28% id,
96% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC from Pseudomonas putida

25% id,
100% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC from Pseudomonas fluorescens

24% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory