Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 31 curated entries in PaperBLAST's database that match '3.1.2.6' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1541: carboxylesterase (RefSeq)
is similar to:
PaperBLAST

YeiG / b2154: S-formylglutathione hydrolase / S-lactoylglutathione hydrolase (EC 3.1.2.12; EC 3.1.2.6) from Escherichia coli
yeiG / P33018: S-formylglutathione hydrolase / S-lactoylglutathione hydrolase (EC 3.1.2.12; EC 3.1.2.6) from Escherichia coli

58% id,
99% cov

Shew_2269: beta-lactamase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

GLO22_ECOLI / P75849: Hydroxyacylglutathione hydrolase GloC; Accessory type II glyoxalase; Glyoxalase II 2; GlxII-2; EC 3.1.2.6 from Escherichia coli
GloC / b0927: hydroxyacylglutathione hydrolase GloC (EC 3.1.2.6) from Escherichia coli
gloC / P75849: hydroxyacylglutathione hydrolase GloC (EC 3.1.2.6) from Escherichia coli

57% id,
99% cov

A0A0D1GCF8: hydroxyacylglutathione hydrolase (EC 3.1.2.6) from Staphylococcus aureus

32% id,
91% cov

GLO2M_ARATH / O24495: Hydroxyacylglutathione hydrolase 1, mitochondrial; Glyoxalase II; Glx II; EC 3.1.2.6 from Arabidopsis thaliana

24% id,
47% cov

Shew_2114: hydroxyacylglutathione hydrolase (RefSeq)
is similar to:
PaperBLAST

GLO2_SALTY / Q8ZRM2: Hydroxyacylglutathione hydrolase; Glyoxalase II; Glx II; EC 3.1.2.6 from Salmonella typhimurium
Q8ZRM2: hydroxyacylglutathione hydrolase (EC 3.1.2.6) from Salmonella enterica

42% id,
100% cov

Q8YZ99: hydroxyacylglutathione hydrolase (EC 3.1.2.6) from Nostoc sp.

42% id,
99% cov

GLO2_ECOLI / P0AC84: Hydroxyacylglutathione hydrolase GloB; Glyoxalase II; Glx II; EC 3.1.2.6 from Escherichia coli
YafR / b0212: hydroxyacylglutathione hydrolase GloB (EC 3.1.2.6) from Escherichia coli
gloB / MB|P0AC84: hydroxyacylglutathione hydrolase; EC 3.1.2.6 from Escherichia coli
gloB / P0AC84: hydroxyacylglutathione hydrolase GloB (EC 3.1.2.6) from Escherichia coli

42% id,
100% cov

More...

Shew_3354: aminotransferase, class V (RefSeq)
is similar to:
PaperBLAST

GLO22_ECOLI / P75849: Hydroxyacylglutathione hydrolase GloC; Accessory type II glyoxalase; Glyoxalase II 2; GlxII-2; EC 3.1.2.6 from Escherichia coli
GloC / b0927: hydroxyacylglutathione hydrolase GloC (EC 3.1.2.6) from Escherichia coli
gloC / P75849: hydroxyacylglutathione hydrolase GloC (EC 3.1.2.6) from Escherichia coli

27% id,
84% cov

Shew_1646: beta-lactamase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

GLO2N_ARATH / Q9SID3: Hydroxyacylglutathione hydrolase 2, mitochondrial; Glyoxalase II; Glx II; EC 3.1.2.6 from Arabidopsis thaliana

23% id,
59% cov

Q940L0: hydroxyacylglutathione hydrolase (EC 3.1.2.6) from Oryza sativa

29% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory