Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 51 curated entries in PaperBLAST's database that match '3.1.3.3' as complete word(s).

These curated entries have 38 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2810: phosphoserine phosphatase SerB (RefSeq) is similar to:	PaperBLAST
SERB_IDILO / Q5QXU4: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Idiomarina loihiensis	46% id, 90% cov
SERB_LACLA / Q9CHW3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Lactococcus lactis	43% id, 97% cov
SERB_ECOLI / P0AGB0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Escherichia coli SerB / b4388: phosphoserine phosphatase (EC 3.1.3.3) from Escherichia coli serB: phosphoserine phosphatase; EC 3.1.3.3 from Escherichia coli serB / P0AGB0: phosphoserine phosphatase (EC 3.1.3.3) from Escherichia coli	55% id, 74% cov
SERB_STRT2 / Q5M3B3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptococcus thermophilus	43% id, 92% cov
SERB_METJA / Q58989: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Methanocaldococcus jannaschii Q58989: phosphoserine phosphatase (EC 3.1.3.3) from Methanocaldococcus jannaschii	41% id, 97% cov
SERB_WOLSU / Q7M7U5: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Wolinella succinogenes	39% id, 99% cov
SERB_VIBCH / Q9KPM2: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Vibrio cholerae	58% id, 64% cov
SERB_HALS3 / B0R7U7: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Halobacterium salinarum	37% id, 96% cov
SERB_POLSJ / Q12A06: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Polaromonas sp.	40% id, 84% cov
SERB_YEAST / P42941: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Saccharomyces cerevisiae	37% id, 89% cov
SERB_ALBFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Albidiferax ferrireducens	37% id, 90% cov
SERB_CAMJD / A7H590: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Campylobacter jejuni	33% id, 97% cov
Q5M819: phosphoserine phosphatase (EC 3.1.3.3) from Rattus norvegicus	34% id, 80% cov
SERB_STRCO / Q9S281: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptomyces coelicolor	40% id, 67% cov
Q99LS3: phosphoserine phosphatase (EC 3.1.3.3) from Mus musculus	33% id, 80% cov
SERB_MYCA1 / A0QJI1: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Mycobacterium avium	41% id, 65% cov
SERB_HUMAN / P78330: Phosphoserine phosphatase; PSP; PSPase; L-3-phosphoserine phosphatase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Homo sapiens PSPH / P78330: L-3-phosphoserine phosphatase (EC 3.1.3.3) from Homo sapiens P78330: phosphoserine phosphatase (EC 3.1.3.3) from Homo sapiens	33% id, 80% cov
B6YX36: phosphoserine phosphatase (EC 3.1.3.3) from Thermococcus onnurineus	29% id, 85% cov
SERB2_MYCTU / O53289: Phosphoserine phosphatase SerB2; PSP; PSPase; O-phosphoserine phosphohydrolase; Protein-serine/threonine phosphatase; EC 3.1.3.3; EC 3.1.3.16 from Mycobacterium tuberculosis O53289: phosphoserine phosphatase (EC 3.1.3.3) from Mycobacterium tuberculosis	42% id, 57% cov
More...

Shew_3196: D-3-phosphoglycerate dehydrogenase (RefSeq) is similar to:	PaperBLAST
Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis	50% id, 64% cov
CA265_RS22635: phosphoserine phosphatase (EC 3.1.3.3) from Pedobacter sp.	37% id, 24% cov

Shew_1157: alkaline phosphatase (RefSeq)
is similar to:

PaperBLAST

PsiA / b0383: alkaline phosphatase (EC 3.1.3.1; EC 3.1.3.75; EC 3.1.3.41; EC 3.1.3.74; EC 3.1.3.99; EC 3.1.3.5; EC 3.1.3.6; EC 3.1.3.89; EC 3.1.3.91; EC 3.1.3.60; EC 3.1.3.15; EC 3.1.3.102; EC 3.1.3.108; EC 3.1.3.11; EC 3.1.3.20; EC 3.1.3.19; EC 3.1.3.3; EC 3.6.1.25; EC 3.6.1.1; EC 3.1.3.23; EC 3.1.3.38; EC 3.1.3.18; EC 3.1.3.68; EC 3.9.1.1) from Escherichia coli
phoA / P00634: alkaline phosphatase (EC 3.1.3.1; EC 3.1.3.75; EC 3.1.3.41; EC 3.1.3.74; EC 3.1.3.99; EC 3.1.3.5; EC 3.1.3.6; EC 3.1.3.89; EC 3.1.3.91; EC 3.1.3.60; EC 3.1.3.15; EC 3.1.3.102; EC 3.1.3.108; EC 3.1.3.11; EC 3.1.3.20; EC 3.1.3.19; EC 3.1.3.3; EC 3.6.1.25; EC 3.6.1.1; EC 3.1.3.23; EC 3.1.3.38; EC 3.1.3.18; EC 3.1.3.68; EC 3.9.1.1) from Escherichia coli

33% id,
80% cov

Shew_3226: alkaline phosphatase (RefSeq)
is similar to:

PaperBLAST

34% id,
74% cov

Shew_0711: phosphoglycerate mutase (RefSeq) is similar to:	PaperBLAST
PSPB_HYDTT / D3DFP8: Putative phosphoserine phosphatase 2; PSP 2; PSPase 2; Metal-independent phosphoserine phosphatase 2; iPSP2; O-phosphoserine phosphohydrolase 2; EC 3.1.3.3 from Hydrogenobacter thermophilus D3DFP8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus	29% id, 79% cov
SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana	26% id, 82% cov
PSPA_HYDTT / D3DFG8: Phosphoserine phosphatase 1; PSP 1; PSPase 1; Metal-independent phosphoserine phosphatase 1; iPSP1; O-phosphoserine phosphohydrolase 1; EC 3.1.3.3 from Hydrogenobacter thermophilus D3DFG8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus	27% id, 77% cov

Shew_0326: HAD family hydrolase (RefSeq) is similar to:	PaperBLAST
PSP_THET2 / Q72H00: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Thermus thermophilus	30% id, 62% cov

Shew_1158: alkaline phosphatase (RefSeq)
is similar to:

PaperBLAST

25% id,
64% cov

Shew_0887: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) is similar to:	PaperBLAST
Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis	29% id, 45% cov

Shew_0787: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) is similar to:	PaperBLAST
Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis	29% id, 44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory