Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 182 curated entries in PaperBLAST's database that match '3.2.1.20' as complete word(s).

These curated entries have 139 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1889: alpha amylase, catalytic region (RefSeq)
is similar to:
PaperBLAST

Shewana3_2311: Alpha-glucosidase (EC 3.2.1.20) from Shewanella sp.

76% id,
99% cov

Psest_0870: Alpha-glucosidase (EC 3.2.1.20) from Pseudomonas stutzeri

59% id,
96% cov

BAL49684.1: α-glucosidase (AglA;HaG) (EC 3.2.1.20)

59% id,
93% cov

More...

Shew_1876: alpha-glucosidase (RefSeq)
is similar to:
PaperBLAST

AEW20125.1: α-glucosidase (SusB;Aglu;BFO_2272) (EC 3.2.1.20)

41% id,
95% cov

Shew_3745: glycoside hydrolase family protein (RefSeq)
is similar to:
PaperBLAST

AAA57881.1: α-glucosidase (YgjK;EcYgjK;b3080) (EC 3.2.1.20|3.2.1.84)
ACB04164.1: ECDH10B_3255 (EC 3.2.1.20|3.2.1.84)
BAE77130.1: ECK3070:JW3051:b3080 (YgjK) (EC 3.2.1.20|3.2.1.84)

36% id,
100% cov

Shew_2298: putative alpha-glucosidase (RefSeq)
is similar to:
PaperBLAST

AEW20125.1: α-glucosidase (SusB;Aglu;BFO_2272) (EC 3.2.1.20)

28% id,
96% cov

Shew_1887: alpha amylase, catalytic region (RefSeq)
is similar to:
PaperBLAST

AAB82327.1: α-glucosidase 1 (Mav1) (EC 3.2.1.20)

22% id,
67% cov

BAL49684.1: α-glucosidase (AglA;HaG) (EC 3.2.1.20)

26% id,
47% cov

ACM89182.1: α-1,6-glucosidase 1 (Agl1; Bbr_1855) (EC 3.2.1.10|3.2.1.20)

26% id,
46% cov

More...

Shew_1886: alpha amylase, catalytic region (RefSeq)
is similar to:
PaperBLAST

AAB82327.1: α-glucosidase 1 (Mav1) (EC 3.2.1.20)

23% id,
42% cov

MAL3_DROME / P07192: Maltase A3; Larval visceral protein L; EC 3.2.1.20 from Drosophila melanogaster
AAM50308.1: α-glucosidase L (LvpL) (EC 3.2.1.20)

24% id,
17% cov

Shew_1168: glycogen branching enzyme (RefSeq)
is similar to:
PaperBLAST

Ga0059261_1581: Maltose or maltodextrin glucosidase (EC 3.2.1.20) from Sphingomonas koreensis

31% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory