Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 521 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 438 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1626: beta-hexosaminidase (RefSeq)
is similar to:

NAG3_CELFI / Q7WUL3: Beta-N-acetylglucosaminidase/beta-glucosidase; 3-beta-N-acetyl-D-glucosaminidase/beta-D-glucosidase; Nag3; EC; EC from Cellulomonas fimi
AAQ05801.1: bifunctional N-acetyl-β-glucosaminidase/β-glucosidase (Nag3) (acts as a phosphorylase in presence of phosphate) (Nag3A) (EC||2.4.1.-)

26% id,
46% cov

AAA22082.1: coniferin β-glucosidase (Cbg1;Cbg-1) (EC|

25% id,
26% cov

ADC53302.1: β-glucosidase (Gluc3M) (EC

27% id,
22% cov

Shew_3269: Beta-galactosidase (RefSeq)
is similar to:

E5RWQ2: beta-glucosidase (EC from Bacillus circulans

25% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory