Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 7 curated entries in PaperBLAST's database that match '3.5.1.16' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3555: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

SO3749: Acetylornithine deacetylase (EC:3.5.1.16) from Shewanella oneidensis

65% id,
98% cov

Shew_0201: acetylornithine deacetylase (RefSeq)
is similar to:
PaperBLAST

ARGE_ECOLI / P23908: Acetylornithine deacetylase; AO; Acetylornithinase; N-acetylornithinase; NAO; EC 3.5.1.16 from Escherichia coli
ArgE / b3957: acetylornithine deacetylase (EC 3.5.1.16) from Escherichia coli
argE / P23908: acetylornithine deacetylase (EC 3.5.1.16) from Escherichia coli

57% id,
99% cov

Shew_3019: zinc carboxypeptidase-related protein (RefSeq)
is similar to:
PaperBLAST

SO3749: Acetylornithine deacetylase (EC:3.5.1.16) from Shewanella oneidensis

32% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory