Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 36 curated entries in PaperBLAST's database that match '3.5.1.25'.

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1117: N-acetylglucosamine-6-phosphate deacetylase (RefSeq)
is similar to:
PaperBLAST

Shew_1117: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Shewanella loihica

100% id,
100% cov

Shewana3_3112: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Shewanella sp.

71% id,
99% cov

SO3505: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Shewanella oneidensis

71% id,
99% cov

More...

Shew_0013: amidohydrolase (RefSeq)
is similar to:
PaperBLAST

Q8DN83: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Streptococcus pneumoniae

38% id,
20% cov

BAA22834.1: N-acetylglucosamine 6-phosphate deacetylase (NagA) (EC 3.5.1.25) from

38% id,
14% cov

NAGA_VIBCH / O32445: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Vibrio cholerae
nagA / O32445: N-acetylglucosamine-6-phosphate deacetylase subunit (EC 3.5.1.25) from Vibrio cholerae

38% id,
14% cov

More...

Shew_3024: amidohydrolase 3 (RefSeq)
is similar to:
PaperBLAST

Q8Y8E8: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Listeria monocytogenes

28% id,
24% cov

Shew_2586: amidohydrolase (RefSeq)
is similar to:
PaperBLAST

agaA / Q8XAC3: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Escherichia coli

34% id,
16% cov

Shew_1967: amidohydrolase (RefSeq)
is similar to:
PaperBLAST

agaA / Q8XAC3: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Escherichia coli

39% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory