Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 8 curated entries in PaperBLAST's database that match '3.5.1.96' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1924: succinylglutamate desuccinylase (RefSeq)
is similar to:
PaperBLAST

PfGW456L13_1977: Succinylglutamate desuccinylase (EC 3.5.1.96) from Pseudomonas fluorescens

38% id,
99% cov

O50177: succinylglutamate desuccinylase (EC 3.5.1.96) from Pseudomonas aeruginosa

38% id,
99% cov

BPHYT_RS07720: Succinylglutamate desuccinylase (EC 3.5.1.96) from Burkholderia phytofirmans

38% id,
96% cov

More...

Shew_3665: succinylglutamate desuccinylase/aspartoacylase (RefSeq)
is similar to:
PaperBLAST

O50177: succinylglutamate desuccinylase (EC 3.5.1.96) from Pseudomonas aeruginosa

27% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory