Searching in Shewanella loihica PV-4 (PV4)
Found 20 curated entries in PaperBLAST's database that match '3.5.3.11'.
These curated entries have 15 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Shewanella loihica PV-4, or try another query
Shew_1621: agmatinase (RefSeq) is similar to: | PaperBLAST |
SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis | 64% id, 98% cov |
SPEB_ECOLI / P60651: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli | 63% id, 99% cov |
speB / P70999: agmatinase (EC 3.5.3.11) from Bacillus subtilis | 36% id, 93% cov |
Shew_3372: arginase/agmatinase/formiminoglutamase (RefSeq) is similar to: | PaperBLAST |
ARGI2_ARATH / Q9ZPF5: Arginase 2, chloroplastic/mitochondrial; Agmatinase ARGAH2; Arginine amidohydrolase 2; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana | 23% id, 77% cov |
ARGI1_ARATH / P46637: Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; AtARGAH1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana | 23% id, 66% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
4021280-4022377 (frame +2) on 113993 is similar to: | PaperBLAST |
ARGI2_ARATH / Q9ZPF5: Arginase 2, chloroplastic/mitochondrial; Agmatinase ARGAH2; Arginine amidohydrolase 2; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana | 23% id, 79% cov |
Lawrence Berkeley National Laboratory