Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 12 curated entries in PaperBLAST's database that match '3.5.3.7' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1621: agmatinase (RefSeq)
is similar to:
PaperBLAST

gbuA / A0A0A1DPD5: 5-guanidino-2-oxopentanoate ureohydrolase (EC 3.5.3.7) from Nocardioides simplex

43% id,
89% cov

gbh / Q8KZT5: guanidinobutyrase subunit (EC 3.5.3.7) from Arthrobacter sp.
Q8KZT5: D-arginase (EC 3.5.3.10); guanidinobutyrase (EC 3.5.3.7) from Arthrobacter sp.

43% id,
84% cov

gbuA / Q88EE2: guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas putida

39% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory