Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 7 curated entries in PaperBLAST's database that match '3.5.3.8' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3372: arginase/agmatinase/formiminoglutamase (RefSeq)
is similar to:
PaperBLAST

Sama_3201: Formiminoglutamase (EC 3.5.3.8) from Shewanella amazonensis

65% id,
98% cov

CA265_RS21455: Formiminoglutamase (EC 3.5.3.8) from Pedobacter sp.

39% id,
87% cov

Q4DSA0: formimidoylglutamase (EC 3.5.3.8) from Trypanosoma cruzi

25% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory