Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 15 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1438: fumarylacetoacetate (FAA) hydrolase (RefSeq)
is similar to:

SO1670: fumarylacetoacetate hydrolase (EC from Shewanella oneidensis

86% id,
100% cov

Psest_3512: fumarylacetoacetate (FAA) hydrolase (EC from Pseudomonas stutzeri

68% id,
99% cov

Shew_1535: fumarylacetoacetate (FAA) hydrolase (RefSeq)
is similar to:

A0A076VF18: fumarylacetoacetase (EC from Rhodotorula diobovata

28% id,
55% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory