Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1619: arginine decarboxylase (RefSeq)
is similar to:
PaperBLAST

Q7MK24: arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus

68% id,
97% cov

Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis

56% id,
94% cov

SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli
speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli
P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

56% id,
94% cov

More...

Shew_3392: ornithine decarboxylase (RefSeq)
is similar to:
PaperBLAST

ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens

26% id,
78% cov

Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni

31% id,
29% cov

O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori

28% id,
26% cov

Shew_0322: diaminopimelate decarboxylase (RefSeq)
is similar to:
PaperBLAST

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

25% id,
56% cov

MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea

28% id,
44% cov

Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri

27% id,
45% cov

More...

Shew_1858: DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq)
is similar to:
PaperBLAST

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

23% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory