Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 5 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2045: keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq)
is similar to:

DGOA_ECOLI / Q6BF16: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; 2-oxo-3-deoxygalactonate 6-phosphate aldolase; 6-phospho-2-dehydro-3-deoxygalactonate aldolase; 6-phospho-2-keto-3-deoxygalactonate aldolase; KDPGal; EC from Escherichia coli
YidU / b4477: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC; EC from Escherichia coli
Q6BF16: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC from Escherichia coli

26% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory