Searching in Shewanella loihica PV-4 (PV4)
Found 12 curated entries in PaperBLAST's database that match '4.1.3.17' as complete word(s).
These curated entries have 9 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Shewanella loihica PV-4, or try another query
| Shew_2117: ribonuclease activity regulator protein RraA (RefSeq) is similar to: | PaperBLAST |
RRAAH_THET8 / Q5SIP7: 4-hydroxy-4-methyl-2-oxoglutarate aldolase; HMG aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; Regulator of ribonuclease activity homolog; EC 4.1.3.17; EC 4.1.1.112 from Thermus thermophilus | 42% id, 95% cov |
LIGK_SPHSK / G2IQQ8: 4-carboxy-4-hydroxy-2-oxoadipate aldolase; CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Sphingobium sp. | 33% id, 64% cov |
| Shew_3370: ribonuclease activity regulator protein RraA (RefSeq) is similar to: | PaperBLAST |
RRAAH_THET8 / Q5SIP7: 4-hydroxy-4-methyl-2-oxoglutarate aldolase; HMG aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; Regulator of ribonuclease activity homolog; EC 4.1.3.17; EC 4.1.1.112 from Thermus thermophilus | 41% id, 95% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory