Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 6 curated entries in PaperBLAST's database that match '4.2.1.116'.

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 23 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2672: carnitinyl-CoA dehydratase (RefSeq)
is similar to:
PaperBLAST

HPCD_METS5 / A4YI89: 3-hydroxypropionyl-coenzyme A dehydratase; 3-hydroxypropionyl-CoA dehydratase; EC 4.2.1.116 from Metallosphaera sedula
Msed_2001 / A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula
A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula

38% id,
99% cov

acuH / Q5LWT8: acryloyl-CoA hydratase (EC 4.2.1.116) from Ruegeria pomeroyi

34% id,
99% cov

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

29% id,
13% cov

Shew_1670: enoyl-CoA hydratase (RefSeq)
is similar to:
PaperBLAST

HPCD_METS5 / A4YI89: 3-hydroxypropionyl-coenzyme A dehydratase; 3-hydroxypropionyl-CoA dehydratase; EC 4.2.1.116 from Metallosphaera sedula
Msed_2001 / A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula
A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula

39% id,
96% cov

acuH / Q5LWT8: acryloyl-CoA hydratase (EC 4.2.1.116) from Ruegeria pomeroyi

34% id,
98% cov

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

35% id,
12% cov

Shew_2425: multifunctional fatty acid oxidation complex subunit alpha (RefSeq)
is similar to:
PaperBLAST

HPCD_METS5 / A4YI89: 3-hydroxypropionyl-coenzyme A dehydratase; 3-hydroxypropionyl-CoA dehydratase; EC 4.2.1.116 from Metallosphaera sedula
Msed_2001 / A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula
A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula

43% id,
73% cov

acuH / Q5LWT8: acryloyl-CoA hydratase (EC 4.2.1.116) from Ruegeria pomeroyi

33% id,
86% cov

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

32% id,
15% cov

Shew_0019: multifunctional fatty acid oxidation complex subunit alpha (RefSeq)
is similar to:
PaperBLAST

HPCD_METS5 / A4YI89: 3-hydroxypropionyl-coenzyme A dehydratase; 3-hydroxypropionyl-CoA dehydratase; EC 4.2.1.116 from Metallosphaera sedula
Msed_2001 / A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula
A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula

34% id,
92% cov

acuH / Q5LWT8: acryloyl-CoA hydratase (EC 4.2.1.116) from Ruegeria pomeroyi

33% id,
76% cov

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

36% id,
10% cov

Shew_0540: enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

HPCD_METS5 / A4YI89: 3-hydroxypropionyl-coenzyme A dehydratase; 3-hydroxypropionyl-CoA dehydratase; EC 4.2.1.116 from Metallosphaera sedula
Msed_2001 / A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula
A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula

31% id,
96% cov

acuH / Q5LWT8: acryloyl-CoA hydratase (EC 4.2.1.116) from Ruegeria pomeroyi

29% id,
93% cov

Shew_3814: naphthoate synthase (RefSeq)
is similar to:
PaperBLAST

HPCD_METS5 / A4YI89: 3-hydroxypropionyl-coenzyme A dehydratase; 3-hydroxypropionyl-CoA dehydratase; EC 4.2.1.116 from Metallosphaera sedula
Msed_2001 / A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula
A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula

29% id,
99% cov

acuH / Q5LWT8: acryloyl-CoA hydratase (EC 4.2.1.116) from Ruegeria pomeroyi

28% id,
93% cov

Shew_2864: 3-hydroxyacyl-CoA dehydrogenase, NAD-binding (RefSeq)
is similar to:
PaperBLAST

HPCD_METS5 / A4YI89: 3-hydroxypropionyl-coenzyme A dehydratase; 3-hydroxypropionyl-CoA dehydratase; EC 4.2.1.116 from Metallosphaera sedula
Msed_2001 / A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula
A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula

46% id,
59% cov

acuH / Q5LWT8: acryloyl-CoA hydratase (EC 4.2.1.116) from Ruegeria pomeroyi

35% id,
75% cov

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

36% id,
11% cov

Shew_0454: enoyl-CoA hydratase (RefSeq)
is similar to:
PaperBLAST

acuH / Q5LWT8: acryloyl-CoA hydratase (EC 4.2.1.116) from Ruegeria pomeroyi

28% id,
94% cov

Shew_2572: enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

HPCD_METS5 / A4YI89: 3-hydroxypropionyl-coenzyme A dehydratase; 3-hydroxypropionyl-CoA dehydratase; EC 4.2.1.116 from Metallosphaera sedula
Msed_2001 / A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula
A4YI89: 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula

26% id,
100% cov

Shew_2557: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

FOX2 / A0A1D8PJ13: D-specific enoyl-CoA hydratase (EC 4.2.1.119; EC 4.2.1.116) from Candida albicans

34% id,
28% cov

Shew_3525: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

FOX2 / A0A1D8PJ13: D-specific enoyl-CoA hydratase (EC 4.2.1.119; EC 4.2.1.116) from Candida albicans

37% id,
25% cov

Shew_1603: 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

FOX2 / A0A1D8PJ13: D-specific enoyl-CoA hydratase (EC 4.2.1.119; EC 4.2.1.116) from Candida albicans

33% id,
26% cov

Shew_2863: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

FOX2 / A0A1D8PJ13: D-specific enoyl-CoA hydratase (EC 4.2.1.119; EC 4.2.1.116) from Candida albicans

32% id,
26% cov

Shew_1326: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

FOX2 / A0A1D8PJ13: D-specific enoyl-CoA hydratase (EC 4.2.1.119; EC 4.2.1.116) from Candida albicans

32% id,
27% cov

Shew_1533: acetyl-CoA synthetase (RefSeq)
is similar to:
PaperBLAST

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

34% id,
24% cov

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

33% id,
9% cov

Shew_2568: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

26% id,
28% cov

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

35% id,
9% cov

Shew_2409: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

FOX2 / A0A1D8PJ13: D-specific enoyl-CoA hydratase (EC 4.2.1.119; EC 4.2.1.116) from Candida albicans

28% id,
25% cov

Shew_1959: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

FOX2 / A0A1D8PJ13: D-specific enoyl-CoA hydratase (EC 4.2.1.119; EC 4.2.1.116) from Candida albicans

27% id,
25% cov

Shew_3415: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

FOX2 / A0A1D8PJ13: D-specific enoyl-CoA hydratase (EC 4.2.1.119; EC 4.2.1.116) from Candida albicans

27% id,
21% cov

Shew_3502: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

30% id,
7% cov

Shew_0996: RpoD family RNA polymerase sigma factor (RefSeq)
is similar to:
PaperBLAST

FOX2 / A0A1D8PJ13: D-specific enoyl-CoA hydratase (EC 4.2.1.119; EC 4.2.1.116) from Candida albicans

48% id,
3% cov

Shew_3274: alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

26% id,
6% cov

Shew_2188: long-chain-fatty-acid--CoA ligase (RefSeq)
is similar to:
PaperBLAST

pcs / A9WEU4: propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus

30% id,
5% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 23 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory