Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 13 curated entries in PaperBLAST's database that match '4.2.1.25' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2046: phosphogluconate dehydratase (RefSeq)
is similar to:
PaperBLAST

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

31% id,
84% cov

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum
I9XDU6: L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum

30% id,
84% cov

Shewana3_2070: L-arabonate dehydratase (EC 4.2.1.25) from Shewanella sp.

30% id,
86% cov

More...

Shew_0292: dihydroxy-acid dehydratase (RefSeq)
is similar to:
PaperBLAST

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

33% id,
64% cov

Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

32% id,
64% cov

AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

31% id,
64% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

311419-313389 (frame +1) on 113993
is similar to:
PaperBLAST

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti
Also see hits to annotated proteins above

33% id,
65% cov

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum
I9XDU6: L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum
Also see hits to annotated proteins above

31% id,
65% cov

HSERO_RS05205: L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae
Also see hits to annotated proteins above

31% id,
61% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory