Searching in Shewanella loihica PV-4 (PV4)
Found 14 curated entries in PaperBLAST's database that match '4.2.1.25' as complete word(s).
These curated entries have 12 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Shewanella loihica PV-4, or try another query
| Shew_2046: phosphogluconate dehydratase (RefSeq) is similar to: | PaperBLAST |
BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans | 31% id, 84% cov |
ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum | 30% id, 84% cov |
Shewana3_2070: L-arabonate dehydratase (EC 4.2.1.25) from Shewanella sp. | 30% id, 86% cov |
| Shew_0292: dihydroxy-acid dehydratase (RefSeq) is similar to: | PaperBLAST |
SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti | 33% id, 64% cov |
Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens | 32% id, 64% cov |
AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens | 31% id, 64% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 311419-313389 (frame +1) on 113993 is similar to: | PaperBLAST |
SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti | 33% id, 65% cov |
ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum | 31% id, 65% cov |
HSERO_RS05205: L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae | 31% id, 61% cov |
Lawrence Berkeley National Laboratory