Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 18 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3757: urocanate hydratase (RefSeq)
is similar to:

Pf1N1B4_1587: Urocanate hydratase (EC from Pseudomonas fluorescens

78% id,
97% cov

PS417_01720: Urocanate hydratase (EC from Pseudomonas simiae

78% id,
98% cov

Ga0059261_3961: Urocanate hydratase (EC from Sphingomonas koreensis

77% id,
99% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory