Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 15 curated entries in PaperBLAST's database that match '4.2.1.9' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0292: dihydroxy-acid dehydratase (RefSeq)
is similar to:
PaperBLAST

ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli
IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli
ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli

78% id,
100% cov

ILVD_RHIL3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium leguminosarum

72% id,
100% cov

ILVD_CAUVC / P55186: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides

72% id,
100% cov

More...

Shew_2046: phosphogluconate dehydratase (RefSeq)
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

30% id,
97% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

30% id,
94% cov

ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator
Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator

31% id,
89% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory